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Create rasters

Functions used to define and create refugia rasters. These should be run in descending order.

build_stress()
Create annual stress % rasters
build_refugia()
Build rasters of binary refugia
build_persist()
Build rasters of persistent refugia
build_delta()
Build rasters of persistent refugia

Vizualise refugia

Functions used to map refugia with tmap.

viz_stress()
Map of % of year stressed
viz_refugia()
Map of refugia per year
viz_persist()
Map of persistence of refugia
viz_delta()
Map of delta refugia

Time series plots of refugia

Functions used to map annual time series of refugia

ts_viz_percentdays()
Plot percent of days meeting refugia conditions over time
ts_viz_refugia()
Plot proportion of year meeting refugia conditions over time

Misc. functions

These are miscellaneous functions.

read_shp()
Read in shapefiles provided by this package

Datasets

These are internal datasets specific to our project, and are required for running package examples.

extent_list
List of extents for case study regions
percentdays
Example dataset of % days of stress
cali_rast()
ROMS 3km California subsetted to 100m depth