Package index • abalone

Create rasters

Functions used to define and create refugia rasters. These should be run in descending order.

build_stress(): Create annual stress % rasters

build_refugia(): Build rasters of binary refugia

build_persist(): Build rasters of persistent refugia

build_delta(): Build rasters of persistent refugia

Vizualise refugia

Functions used to map refugia with tmap.

viz_stress(): Map of % of year stressed

viz_refugia(): Map of refugia per year

viz_persist(): Map of persistence of refugia

viz_delta(): Map of delta refugia

Time series plots of refugia

Functions used to map annual time series of refugia

ts_viz_percentdays(): Plot percent of days meeting refugia conditions over time

ts_viz_refugia(): Plot proportion of year meeting refugia conditions over time

Misc. functions

These are miscellaneous functions.

read_shp(): Read in shapefiles provided by this package

Datasets

These are internal datasets specific to our project, and are required for running package examples.

extent_list: List of extents for case study regions

percentdays: Example dataset of % days of stress

cali_rast(): ROMS 3km California subsetted to 100m depth