This produces a nice tmap object that shows persistence of refugia (%) for the time period of interest
Usage
viz_persist(
yr_range = 2070:2099,
esm = c("gfdltv", "hadtv", "ipsltv", "ens"),
area = c("monterey_bay", "channel_islands", "fort_bragg", "san_francisco"),
def = "def8",
extent_list = abalone::extent_list,
breaks = seq(0, 100, 20),
persist_thresh = c(50, 95)
)Arguments
- yr_range
Numeric vector range of years. Defaults to 2070:2099
- esm
ESM model. Choose one from
c("gfdltv", "hadtv", "ipsltv", "ens")- area
Character. Name of the area; must match a key in
abalone::extent_list.- def
Character. Refugia definition name (e.g., "def8") used in input file paths.
- extent_list
List of vectors. Defaults to
abalone::extent_list- breaks
Sequence of integers. Defines the breaks used for the zlimits of the map. Defaults to
seq(0, 100, 20)- persist_thresh
Integer. Temporal threshold (%) used for defining annual refugia. Choose either 50 (liberal) or 95% (conservative).
Examples
viz_persist(yr = 2070:2099, esm = "ens", area = "monterey_bay",
def = "def8", extent_list = abalone::extent_list, breaks = seq(0, 100, 20),
persist_thresh = 50)
