Plot proportion of year meeting refugia conditions over time

This function produces a ggplot2 object of an annual time series of refugia across all ESMs, including the ensemble mean. It tells you the proportion of each year that refugia condtions were met, based on the temporal threshold used. Note this function will only work for refugia definitions that are calculated using % of year defined as refugia (i.e., not Definitions 1-2).

Usage

ts_viz_refugia(
  area = c("monterey_bay", "channel_islands", "fort_bragg", "san_francisco"),
  yr_range = 1990:2100,
  def = "def8",
  input_file = abalone::percentdays,
  persist_thresh = c(50, 95),
  extent_list = abalone::extent_list
)

Arguments

area

Character. Name of the area; must match a key in abalone::extent_list.

yr_range

Numeric vector. Range of years to include. Default is 1990–2100.

def

Character. Refugia definition name (e.g., "def8") used in input file paths.

input_file

R Object. Dataframe of % of year stressed. Defaults to abalone::percentdays

persist_thresh

Integer. Value representing the temporal threshold used to define refugia

extent_list

List of vectors. Defaults to abalone::extent_list

Value

Produces a ggplot2::ggplot object of an annual time series of refugia.

Examples

ts_viz_refugia(area = "monterey_bay", yr_range = 1990:2100, def = "def8",
input_file = abalone::percentdays, persist_thresh = 50,
 extent_list = abalone::extent_list)