Plot percent of days meeting refugia conditions over time

This function produces a ggplot2 object of an annual time series of refugia across all ESMs, including the ensemble mean. The plot includes dashed horizontal lines for the two temporal thresholds used to define refugia: 95 and 50%. Note this function will only work for refugia definitions that are calculated using % of year defined as refugia (i.e., not Definitions 1-2).

Usage

ts_viz_percentdays(
  area = c("monterey_bay", "channel_islands", "fort_bragg", "san_francisco"),
  yr_range = 1990:2100,
  def = "def8",
  input_file = abalone::percentdays,
  cons_thresh = 95,
  lib_thresh = 50,
  extent_list = abalone::extent_list,
  plot_title = "% of year refugia conditions met"
)

Arguments

area

Character. Name of the area; must match a key in abalone::extent_list.

yr_range

Numeric vector. Range of years to include. Default is 1990–2100.

def

Character. Refugia definition name (e.g., "def8") used in input file paths.

input_file

R Object. Dataframe of % of year stressed. Defaults to abalone::percentdays

cons_thresh

Integer. Value representing the conservative temporal threshold to define refugia. Defaults to 95(%)

lib_thresh

Integer. Value representing the liberal temporal threshold to define refugia. Defaults to 50(%)

extent_list

List of vectors. Defaults to abalone::extent_list

plot_title

Character string. Title displayed on the ggplot

Value

Produces a ggplot2::ggplot object of an annual time series of refugia.

Examples

ts_viz_percentdays(area = "monterey_bay", yr_range = 1990:2100, def = "def8",
input_file = abalone::percentdays, cons_thresh = 95, lib_thresh = 50)